HerdPlus: SeH and SpH for listed herd sizes and optimised sample sizes
Calculate herd sensitivity (SeH) and herd specificity (SpH) for specified herd sizes, optimised sample sizes (up to specified maximum), test sensitivity, test specificity, design prevalence and cut-point numbers of reactors. SeH and SpH are calculated for optimised sample sizes (constrained to <= specified maximum sample size for each herd size) to achieve given minimum SeH (or for given maximum sample size if minimum SeH is not achievable).
- Test sensitivity and specificity;
- Animal-level design prevalence (the hypothetical prevalence to be detected);
- Minimum desired SeH;
- The cut-point number of reactors to classify a herd/flock as positive (if there are fewer reactors than the specified cut-point the herd is negative, if the number of reactors is >= cut-point the herd is positive);
- The desired precision of results (number of digits to be displayed after the decimal point); and
- Pasted data containing columns of herd sizes and corresponding maximum sample sizes.
Results are calculated using the HerdPlus method (Greiner 2006?) and include:
- A table of optimised sample size and corresponding values for SeH and SpH for each specified herd size and maximum sample size; and
- A plot of SeH and SpH against herd size.
Developed by Matthias Greiner and Evan Sergeant